I don't think it has been solved with 1.0-4363, as I'm still getting the following in the verbose log:
(--) NVIDIA(0): Found 2 CRTCs on board
(II) NVIDIA(0): Supported display device(s): CRT-0, CRT-1, DFP-0, DFP-1
(II) NVIDIA(0): Boot display device(s): CRT-1
(II) NVIDIA(0): NVIDIA GPU detected as: Quadro4 900 XGL
(II) NVIDIA(0): Mapping display device 0 (CRT-0) to CRTC 1
(II) NVIDIA(1): Mapping display device 1 (CRT-1) to CRTC 0
Ideally, I would like to be able to force the mapping of CRT-0 to CRTC 0 and CRT-1 to CRTC 1. Like with the following XFree86 4.3.0 "nv" driver option:
Option "CrtcNumber" "integer"
nForce2, Quadro4, GeForce4 and NV30 may have two video outputs. The driver attempts to autodetect which one the monitor is connected to. In the case that autodetection picks the wrong one, this option may be used to force usage of a particular output. The options are "0" or "1". Default: autodetected.