OK... umm... that is VERY strange. What does ls -ld /lib/modules/2.4.20-13.9/build say? What about ls -ld /lib/modules/2.4.20-13.9/build/include?
Open the file that's complaining in an editor (that is, /lib/modules/2.4.20-13.9/build/include/linux/modversions.h), and post the first 20 or 30 lines or so (actually, you might want to just attach the whole file -- rename it to .txt first, though).
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