You repaired the MBR when you ran the repair disc, right?
http://www.ehow.com/how_4836283_repair-mbr-windows.html
EDIT: Oh didn't see this:
Quote:
Originally Posted by |MaguS|
I finally got it fixed, had to mess with partition activity and run setup fix like 5 times. It looked like MBR got curropt.
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I agree with nekro though, you still need to figure out wth caused it.