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Old 12-02-04, 04:18 PM   #1
igory_1999
Registered User
 
Join Date: Dec 2004
Posts: 2
Default GeForce2 MX/MX 400, Fedora Core 3 & matlab

Hi,

I have just installed matlab on computer A (3 year old desktop with nvidia GeForce2 MX/MX 400 video card NV11) and computer B (brand new dell laptop with NV34M GeForce FX Go 5200 video card). Same cd disks were used to install both Fedora Core 3 and Matlab R14 on both computers. Both computers are constantly updated with the latest software releases.

Yet, on computer B matlab starts just fine while on computer A it would not start at all. It crashes with some java errors (see below).
Since both computers are running exactly the same software, same configuration, the only thing I can think of is hadrware differences and in particular video card (considering that matlab critically depends on java and opengl).

After encounting this problem, I have installed the latest nvidia driver on computer A but it did not help.

Previously I had RedHat 9 on computer A and matlab R14 worked fine with it. So it looks like Fedora Core 3 has worse support for my video card.

Any ideas?

Another minor problem with computer A that might or might not be related: when using default gnome terminal and scrolling up and down, part of the text sometimes disappears, scrolling up and down again sometimes make the disappeared text appear again. How to fix this annoying feature?

Thank you,
Igor
===================================
[igor@miro ~]$ /usr/local/mbin/matlab
Warning: Could not read file classpath.txt.
Warning: Could not read file librarypath.txt.
Warning: Class com/mathworks/jmi/NativeMatlab not found--unable to register native methods.
Opening log file: /home/igor/java.log.3262
java.lang.NoClassDefFoundError: com/mathworks/jmi/NativeMatlab

------------------------------------------------------------------------
Fatal Java Exception detected at Thu Dec 2 16:07:05 2004
------------------------------------------------------------------------
Please follow these steps in reporting this problem to The MathWorks so
that we have the best chance of correcting it:

1. Send us this crash report. For your convenience, this information
has been recorded in: /home/igor/java.log.3262
..............
=========================java.log.3262============ ==============

[igor@miro ~]$ more java.log.3262
Exception in thread "main"
Unexpected Signal : 11 occurred at PC=0x44B9771
Function=(null)+0x44B9771
Library=/usr/local/matlabR14/sys/java/jre/glnx86/jre1.4.2/lib/i386/client/libjvm.so

NOTE: We are unable to locate the function name symbol for the error
just occurred. Please refer to release documentation for possible
reason and solutions.


Current Java thread:

Dynamic libraries:
00111000-0014d000 r-xp 00000000 22:01 4620683 /usr/local/matlabR14/bin/glnx86/libmx.so
0014d000-00157000 rwxp 0003b000 22:01 4620683 /usr/local/matlabR14/bin/glnx86/libmx.so
00157000-001d5000 r-xp 00000000 22:01 4620611 /usr/local/matlabR14/bin/glnx86/libmwbridge.so
001d5000-001e1000 rwxp 0007d000 22:01 4620611 /usr/local/matlabR14/bin/glnx86/libmwbridge.so
001e9000-001fc000 r-xp 00000000 22:01 4620655 /usr/local/matlabR14/bin/glnx86/libmwmcr.so
001fc000-001ff000 rwxp 00012000 22:01 4620655 /usr/local/matlabR14/bin/glnx86/libmwmcr.so
00200000-00271000 r-xp 00000000 22:01 4620641 /usr/local/matlabR14/bin/glnx86/libmwm_dispatcher.so
00271000-00283000 rwxp 00070000 22:01 4620641 /usr/local/matlabR14/bin/glnx86/libmwm_dispatcher.so
00283000-00291000 r-xp 00000000 22:01 5639483 /lib/tls/libpthread-2.3.3.so
00291000-00292000 r-xp 0000d000 22:01 5639483 /lib/tls/libpthread-2.3.3.so
00292000-00293000 rwxp 0000e000 22:01 5639483 /lib/tls/libpthread-2.3.3.so
00295000-002b6000 r-xp 00000000 22:01 5639472 /lib/tls/libm-2.3.3.so
002b6000-002b7000 r-xp 00020000 22:01 5639472 /lib/tls/libm-2.3.3.so
002b7000-002b8000 rwxp 00021000 22:01 5639472 /lib/tls/libm-2.3.3.so
002b8000-002be000 r-xp 00000000 22:01 4636694 /usr/local/matlabR14/sys/os/glnx86/libgcc_s.so.1
002be000-002c0000 rwxp 00005000 22:01 4636694 /usr/local/matlabR14/sys/os/glnx86/libgcc_s.so.1
002c0000-002c1000 r-xp 00000000 22:01 4620597 /usr/local/matlabR14/bin/glnx86/libicudata.so.24.0
002c1000-002c2000 rwxp 00000000 22:01 4620597 /usr/local/matlabR14/bin/glnx86/libicudata.so.24.0
002c3000-002c5000 r-xp 00000000 22:01 5639479 /lib/libdl-2.3.3.so
002c5000-002c6000 r-xp 00001000 22:01 5639479 /lib/libdl-2.3.3.so
002c6000-002c7000 rwxp 00002000 22:01 5639479 /lib/libdl-2.3.3.so
002c7000-002d3000 r-xp 00000000 22:01 4620697 /usr/local/matlabR14/bin/glnx86/libz.so.1.1.4
002d3000-002d6000 rwxp 0000b000 22:01 4620697 /usr/local/matlabR14/bin/glnx86/libz.so.1.1.4
002d7000-002da000 r-xp 00000000 22:01 4636700 /usr/local/matlabR14/sys/os/glnx86/libtermcap.so
002da000-002db000 rwxp 00002000 22:01 4636700 /usr/local/matlabR14/sys/os/glnx86/libtermcap.so
002e0000-00358000 r-xp 00000000 22:01 4620669 /usr/local/matlabR14/bin/glnx86/libmwservices.so
00358000-00367000 rwxp 00077000 22:01 4620669 /usr/local/matlabR14/bin/glnx86/libmwservices.so
00372000-00384000 r-xp 00000000 22:01 4620659 /usr/local/matlabR14/bin/glnx86/libmwmpath.so
00384000-00389000 rwxp 00011000 22:01 4620659 /usr/local/matlabR14/bin/glnx86/libmwmpath.so
0038b000-00394000 r-xp 00000000 22:01 4620607 /usr/local/matlabR14/bin/glnx86/libmex.so
00394000-00397000 rwxp 00008000 22:01 4620607 /usr/local/matlabR14/bin/glnx86/libmex.so
00397000-0039e000 r-xp 00000000 22:01 4620605 /usr/local/matlabR14/bin/glnx86/libmat.so
0039e000-003a0000 rwxp 00006000 22:01 4620605 /usr/local/matlabR14/bin/glnx86/libmat.so
003a0000-003be000 r-xp 00000000 22:01 4620686 /usr/local/matlabR14/bin/glnx86/libuij.so
003be000-003c4000 rwxp 0001d000 22:01 4620686 /usr/local/matlabR14/bin/glnx86/libuij.so
003c5000-003c9000 r-xp 00000000 22:01 4620677 /usr/local/matlabR14/bin/glnx86/libmwuinone.so
003c9000-003cb000 rwxp 00003000 22:01 4620677 /usr/local/matlabR14/bin/glnx86/libmwuinone.so
003cb000-003cf000 r-xp 00000000 22:01 4620617 /usr/local/matlabR14/bin/glnx86/libmwcolamd.so
003cf000-003d0000 rwxp 00003000 22:01 4620617 /usr/local/matlabR14/bin/glnx86/libmwcolamd.so
003d3000-003dc000 r-xp 00000000 22:01 4620633 /usr/local/matlabR14/bin/glnx86/libmwir_xfmr.so
003dc000-003de000 rwxp 00008000 22:01 4620633 /usr/local/matlabR14/bin/glnx86/libmwir_xfmr.so
003de000-003e5000 r-xp 00000000 22:01 3224680 /usr/X11R6/lib/libXp.so.6.2
003e5000-003e6000 rwxp 00006000 22:01 3224680 /usr/X11R6/lib/libXp.so.6.2
003e6000-00411000 r-xp 00000000 22:01 4620635 /usr/local/matlabR14/bin/glnx86/libmwjmi.so
00411000-0041d000 rwxp 0002a000 22:01 4620635 /usr/local/matlabR14/bin/glnx86/libmwjmi.so
0041d000-004a3000 r-xp 00000000 22:01 4620603 /usr/local/matlabR14/bin/glnx86/libicuuc.so.24.0
004a3000-004b4000 rwxp 00085000 22:01 4620603 /usr/local/matlabR14/bin/glnx86/libicuuc.so.24.0
004b6000-005d7000 r-xp 00000000 22:01 5639466 /lib/tls/libc-2.3.3.so
005d7000-005d9000 r-xp 00120000 22:01 5639466 /lib/tls/libc-2.3.3.so
005d9000-005db000 rwxp 00122000 22:01 5639466 /lib/tls/libc-2.3.3.so
005dd000-00680000 r-xp 00000000 22:01 4620600 /usr/local/matlabR14/bin/glnx86/libicui18n.so.24.0
00680000-00699000 rwxp 000a2000 22:01 4620600 /usr/local/matlabR14/bin/glnx86/libicui18n.so.24.0
00699000-006b4000 r-xp 00000000 22:01 4620621 /usr/local/matlabR14/bin/glnx86/libmwdatasvcs.so
006b4000-006b8000 rwxp 0001a000 22:01 4620621 /usr/local/matlabR14/bin/glnx86/libmwdatasvcs.so
006b8000-006ca000 r-xp 00000000 22:01 4620651 /usr/local/matlabR14/bin/glnx86/libmwm_pcodeio.so
006ca000-006ce000 rwxp 00011000 22:01 4620651 /usr/local/matlabR14/bin/glnx86/libmwm_pcodeio.so
006ce000-006df000 r-xp 00000000 22:01 4620649 /usr/local/matlabR14/bin/glnx86/libmwm_pcodegen.so
006df000-006e3000 rwxp 00010000 22:01 4620649 /usr/local/matlabR14/bin/glnx86/libmwm_pcodegen.so
006e3000-006f0000 r-xp 00000000 22:01 3216170 /usr/X11R6/lib/libXext.so.6.4
006f0000-006f1000 rwxp 0000c000 22:01 3216170 /usr/X11R6/lib/libXext.so.6.4
006f1000-00759000 r-xp 00000000 22:01 4620691 /usr/local/matlabR14/bin/glnx86/libut.so
00759000-0076c000 rwxp 00067000 22:01 4620691 /usr/local/matlabR14/bin/glnx86/libut.so
00788000-007b1000 r-xp 00000000 22:01 4620627 /usr/local/matlabR14/bin/glnx86/libmwhardcopy.so
007b1000-007b6000 rwxp 00028000 22:01 4620627 /usr/local/matlabR14/bin/glnx86/libmwhardcopy.so
007b7000-007be000 r-xp 00000000 22:01 3216146 /usr/X11R6/lib/libSM.so.6.0
007be000-007bf000 rwxp 00007000 22:01 3216146 /usr/X11R6/lib/libSM.so.6.0
007c0000-007c9000 r-xp 00000000 22:01 5636146 /lib/libnss_files-2.3.3.so
007c9000-007ca000 r-xp 00008000 22:01 5636146 /lib/libnss_files-2.3.3.so
007ca000-007cb000 rwxp 00009000 22:01 5636146 /lib/libnss_files-2.3.3.so
007cb000-007cf000 r-xp 00000000 22:01 5636143 /lib/libnss_dns-2.3.3.so
007cf000-007d0000 r-xp 00003000 22:01 5636143 /lib/libnss_dns-2.3.3.so
007d0000-007d1000 rwxp 00004000 22:01 5636143 /lib/libnss_dns-2.3.3.so
007d1000-007d3000 r-xp 00000000 22:01 3277809 /usr/X11R6/lib/X11/locale/lib/common/xlcDef.so.2
007d3000-007d4000 rwxp 00001000 22:01 3277809 /usr/X11R6/lib/X11/locale/lib/common/xlcDef.so.2
007d6000-007eb000 r-xp 00000000 22:01 5639460 /lib/ld-2.3.3.so
007eb000-007ec000 r-xp 00014000 22:01 5639460 /lib/ld-2.3.3.so
007ec000-007ed000 rwxp 00015000 22:01 5639460 /lib/ld-2.3.3.so
007ed000-00a06000 r-xp 00000000 22:01 4620643 /usr/local/matlabR14/bin/glnx86/libmwm_interpreter.so
00a06000-00a6d000 rwxp 00218000 22:01 4620643 /usr/local/matlabR14/bin/glnx86/libmwm_interpreter.so
00a8d000-00b14000 r-xp 00000000 22:01 4620673 /usr/local/matlabR14/bin/glnx86/libmwudd.so
00b14000-00b38000 rwxp 00086000 22:01 4620673 /usr/local/matlabR14/bin/glnx86/libmwudd.so

.............

05014000-050d7000 r-xp 00000000 22:01 3216148 /usr/X11R6/lib/libX11.so.6.2
050d7000-050db000 rwxp 000c3000 22:01 3216148 /usr/X11R6/lib/libX11.so.6.2
05145000-0568d000 r-xs 00000000 22:01 4636784 /usr/local/matlabR14/sys/java/jre/glnx86/jre1.4.2/lib/charsets.jar
05786000-0579a000 r-xp 00000000 22:01 4636865 /usr/local/matlabR14/sys/java/jre/glnx86/jre1.4.2/lib/i386/libzip.so
0579a000-0579d000 rwxp 00013000 22:01 4636865 /usr/local/matlabR14/sys/java/jre/glnx86/jre1.4.2/lib/i386/libzip.so
060a1000-060b3000 r-xp 00000000 22:01 5639493 /lib/libnsl-2.3.3.so
060b3000-060b4000 r-xp 00011000 22:01 5639493 /lib/libnsl-2.3.3.so
060b4000-060b5000 rwxp 00012000 22:01 5639493 /lib/libnsl-2.3.3.so
06739000-06a5c000 r-xp 00000000 22:01 4620568 /usr/local/matlabR14/bin/glnx86/atlas_Athlon.so
06a5c000-06a5d000 rwxp 00322000 22:01 4620568 /usr/local/matlabR14/bin/glnx86/atlas_Athlon.so
06c4a000-06e4f000 r-xp 00000000 22:01 4620694 /usr/local/matlabR14/bin/glnx86/libxerces-c.so.21.0
06e4f000-06eb2000 rwxp 00204000 22:01 4620694 /usr/local/matlabR14/bin/glnx86/libxerces-c.so.21.0
074f9000-0765b000 r-xp 00000000 22:01 4620629 /usr/local/matlabR14/bin/glnx86/libmwhg.so
0765b000-076b1000 rwxp 00161000 22:01 4620629 /usr/local/matlabR14/bin/glnx86/libmwhg.so
07ba1000-07baf000 r-xp 00000000 22:01 4620637 /usr/local/matlabR14/bin/glnx86/libmwjmi_mi.so
07baf000-07bb2000 rwxp 0000d000 22:01 4620637 /usr/local/matlabR14/bin/glnx86/libmwjmi_mi.so
08048000-0804b000 r-xp 00000000 22:01 4620565 /usr/local/matlabR14/bin/glnx86/MATLAB
0804b000-0804d000 rwxp 00002000 22:01 4620565 /usr/local/matlabR14/bin/glnx86/MATLAB
f5923000-f7000000 r-xs 00000000 22:01 4636880 /usr/local/matlabR14/sys/java/jre/glnx86/jre1.4.2/lib/rt.jar

Heap at VM Abort:
Heap
def new generation total 1152K, used 140K [0xeb920000, 0xeba50000, 0xebe00000)
eden space 1088K, 12% used [0xeb920000, 0xeb943298, 0xeba30000)
from space 64K, 0% used [0xeba30000, 0xeba30000, 0xeba40000)
to space 64K, 0% used [0xeba40000, 0xeba40000, 0xeba50000)
tenured generation total 15168K, used 0K [0xebe00000, 0xeccd0000, 0xef920000)
the space 15168K, 0% used [0xebe00000, 0xebe00000, 0xebe00200, 0xeccd0000)
compacting perm gen total 4096K, used 856K [0xef920000, 0xefd20000, 0xf3920000)
the space 4096K, 20% used [0xef920000, 0xef9f6378, 0xef9f6400, 0xefd20000)

Local Time = Thu Dec 2 16:07:05 2004
Elapsed Time = 0
#
# HotSpot Virtual Machine Error : 11
# Error ID : 4F530E43505002EF
# Please report this error at
# http://java.sun.com/cgi-bin/bugreport.cgi
#
# Java VM: Java HotSpot(TM) Client VM (1.4.2_02-b03 mixed mode)
#
# An error report file has been saved as hs_err_pid3262.log.
# Please refer to the file for further information.
#
Stack Trace:
[0] libjvm.so:0x0454d553(1, 0x080e0170, 0x04706470 "TVA", 0)
[1] libjvm.so:0x0454a1fa(0x080e1d90 ", 11, 0x044b9771, 0xfee0cc90)
[2] libjvm.so:JVM_handle_linux_signal~(11, 0xfee0cc90, 0xfee0cd10, 1) + 1002 bytes
[3] libjvm.so:0x0454cde8(11, 0xfee0cc90, 0xfee0cd10, 11)
[4] libpthread.so.0:0x0028e8a0(0x080e1e30, 0, 0xfeffc230, 3)
[5] libmwjmi_mi.so:InitJavaMsg(JNIEnv_*)(0x080e1e30, 2, 0x080db2b0, 0x07ba4f1e) + 176 bytes
[6] libmwjmi_mi.so:.L89(0x080e1e30, 11, 0, 0) + 11 bytes
[7] libmwjmi.so:JavaInitMIBridge(0x080e1e30, 0xfeffc2ec, 4193740, 4190844) + 32 bytes
[8] libmwjmi.so:InitJava(0xfeffc578, 0x007e19f0, 0x0076b0a4, 2090868) + 233 bytes
[9] libmwjmi.so:mljInit(0x007ebfb4 ", 0xfeffe448, 0x040393c1 "libmwlapack.so", 0xfeffc470) + 26 bytes
[10] libmwmcr.so:mcrGlobalOptionsInternal::mcr_initiali ze0(MfileReader*, bool)(0x0809a3e0, 0x0809e4b0, 0, 0) + 2284 bytes
[11] libmwmcr.so:mcrGlobalOptionsInternal::mcr_initiali ze(MfileReader*, bool)(0x0809a3e0, 0x0809e4b0, 0, 0x0036ee80 "/usr/local/matlabR14/bin/glnx86") + 79 bytes
[12] libmwmcr.so:mcrInstance::mcrInstance(mcrOptions&, MfileReader*)(0x0809e488, 0xfeffc8f0, 0x0809e4b0, 0xfeffe448) + 265
bytes
[13] MATLAB:mcrMain(int, char**)(1, 0xfeffe9e4, 0, 0xfeffe958 ") + 239 bytes
[14] MATLAB:main(1, 0xfeffe9e4, 0xfeffe9ec, 0x007e1ab6) + 23 bytes
[15] libc.so.6:__libc_start_main~(0x0804a7d0, 1, 0xfeffe9e4, 0x0804a3e4) + 227 bytes

------------------------------------------------------------------------
Fatal Java Exception detected at Thu Dec 2 16:07:05 2004
------------------------------------------------------------------------

Configuration:
MATLAB Version: 7.0.0.19901 (R14)
Operating System: Linux 2.6.9-1.681_FC3smp #1 SMP Thu Nov 18 15:19:10 EST 2004 i686
Window System: The X.Org Foundation (60801000), display :0.0
Current Visual: 0x21 (class 4, depth 16)
Processor ID: x86 Family 6 Model 6 Stepping 2, AuthenticAMD
Virtual Machine: Java with
()
Default Charset: UTF-8

Java with
()
igory_1999 is offline   Reply With Quote
Old 12-02-04, 04:59 PM   #2
Thunderbird
 
Join Date: Jul 2002
Location: Netherlands, Europe
Posts: 2,105
Default Re: GeForce2 MX/MX 400, Fedora Core 3 & matlab

There's no indication that the problem is related to your videocard. I bet the problem is still there when you would use lets say the vesa or nv driver in xfree86. Not sure what it is but allmost sure it isn't nvidia.

A quick search on google showed similar errors with matlab, so likely you can find your solution there. (might be a jvm issue)
Thunderbird is offline   Reply With Quote
Old 12-02-04, 05:09 PM   #3
igory_1999
Registered User
 
Join Date: Dec 2004
Posts: 2
Default Re: GeForce2 MX/MX 400, Fedora Core 3 & matlab

Quote:
Originally Posted by Thunderbird
There's no indication that the problem is related to your videocard. I bet the problem is still there when you would use lets say the vesa or nv driver in xfree86. Not sure what it is but allmost sure it isn't nvidia.

A quick search on google showed similar errors with matlab, so likely you can find your solution there. (might be a jvm issue)
Yes this problem is reported on matlab forums but there seems to be no universal solution I could find there.
For some people installing the latest video driver helped.
For some people using a different version of Java or setting LD_ASSUME_KERNEL helped. Considering that I have two computers with identical software but different hardware, upgrading the video driver looked like the most likely way to fix it (previously I used nv driver that Fedora configured by default). Now, I guess, I'll have to play with different Java versions...
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